miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|156154054|gb|EW714200.1|EW714200 GGATATTGTTCATTTCAATGGCAAATTTCAAGTTTCCTCTGCTTATACTGTTCGTTCTATATTTTTCCCAGCTTCATCTA
CTTCAGTTTCACCATGACTTCTTCTCTTCTTTTCCGGTCAAGATCGGTCTACTCATCATATCCATCCTCCTCTACACCGA
AGAAACAATCCAATTCATGACGAGGATACTGAACCGGTCCGGTTTAGGAGAGGATACGTACGCCCCACGTTGCATGTTGA
CATCTCCACCAACACCATCAATGTTTGAGGCAAGACATGAAGCCGAATTAGTCATATTCGGAGCTCTTAACTCGCTATTC
AAGAAAACCGGAGTTGAGCCGAGAGAAGTTGGAATCTTCGTTGTAAACTGCAGCGTGTTTAACCCTAACCCATCTCTCTC
TTCCATGATCGTAAATCGGTACAAGCTCAAAACCGACGTGAAAACATACAATCTCTCCGGTATGGGATGCAGCGCCGGCG
CAATCTCTGTAGATCTCGCCACGCATCTTCTTAAAGCAAACCCTAATACCTATGCAGTCATTGTTAGCACAGAGAACATG
ACTCTTAGCATGTATCGAGGCAACGACCGGTCCATGTTAGTCCCTAACTGTCTATTTCGAGTAGGAGGTGCCGCGGTTTT
GCTCTCAAACCGAAGCCAAGACAGAGTTCGGTCTAAGTATGAGTTGACTCAACTCGTTAGGACCCACAAAGGAGCTAGCG
ACAAACATTACACTTGTGCTGACC




Most similar to sp|Q9ZUZ0|KCS13_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9ZUZ0|KCS13_ARATH 3-ketoacyl-CoA synthase 13 OS=Arabidopsis
           thaliana GN=HIC PE=2 SV=1
          Length = 466

 Score =  421 bits (1082), Expect = e-117
 Identities = 215/287 (74%), Positives = 235/287 (81%), Gaps = 41/287 (14%)
 Frame = +3

Query: 6   LFISMANFKFPLLILFVLYFSQLHLLQFHHDFFSSFPVKIGLLIISIL------------ 149
           +FI+MA+FK  LLIL ++   +L LL FHHDFFS FPVKIGLL+ISI             
Sbjct: 1   MFIAMADFKILLLILILISLFELDLLHFHHDFFSPFPVKIGLLLISIFFYAYSTTRSKPV 60

Query: 150 -----------------------------LYTEETIQFMTRILNRSGLGEDTYAPRCMLT 242
                                        LYT+ETIQFMTRILNRSGLG+DTY+PRCMLT
Sbjct: 61  YLVDFSCHQPTDSCKISSETFFNMAKGAQLYTDETIQFMTRILNRSGLGDDTYSPRCMLT 120

Query: 243 SPPTPSMFEARHEAELVIFGALNSLFKKTGVEPREVGIFVVNCSVFNPNPSLSSMIVNRY 422
           SPPTPSM+EARHE+ELVIFGALNSLFKKTG+EPREVGIF+VNCS+FNPNPSLSSMIVNRY
Sbjct: 121 SPPTPSMYEARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRY 180

Query: 423 KLKTDVKTYNLSGMGCSAGAISVDLATHLLKANPNTYAVIVSTENMTLSMYRGNDRSMLV 602
           KLKTDVKTYNLSGMGCSAGAISVDLAT+LLKANPNTYAVIVSTENMTLSMYRGNDRSMLV
Sbjct: 181 KLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENMTLSMYRGNDRSMLV 240

Query: 603 PNCLFRVGGAAVLLSNRSQDRVRSKYELTQLVRTHKGASDKHYTCAD 743
           PNCLFRVGGAAV+LSNRSQDRVRSKYELT +VRTHKG+SDKHYTCA+
Sbjct: 241 PNCLFRVGGAAVMLSNRSQDRVRSKYELTHIVRTHKGSSDKHYTCAE 287